The example below shows how put together a RNAseq pipeline with basic functionality. It maps a collection of read-pairs to a given reference genome and outputs the respective transcript model.
In order to run this pipeline in your computer you will required:
Install Nextflow entering the following command in the shell terminal:
$ curl -fsSL get.nextflow.io | bash
Then launch the pipeline execution using this command:
$ nextflow run rnatoy -with-docker
It will automatically download the pipeline Github repository and the associated Docker images, thus the first execution can requires few minutes to complete depending you network connection.